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To make the results accessible, sSNAPPY includes a suite of powerful and easy-to-use visualization functions. Researchers can visualize significantly perturbed pathways as interactive networks, identify key "hub" genes responsible for the perturbation, and compare pathway activity across different treatment groups with clear, publication-ready graphics.
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High-quality data analysis is incomplete without robust statistics. sSNAPPY provides functions to simulate null distributions of perturbation scores through sample permutation. This process generates permuted p-values, allowing users to test the significance of pathway perturbation at both the individual-sample and overall treatment levels. Shop the drop
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